Past seminars: Genomics/Bioinformatics
Genomics/Bioinformatics seminars at the Center for Human and Clinical Genetics
Leiden University Medical Center
Date Speaker Title Host Group Room

February 19 Jelle Goeman
(Medical Statistics)
The "penalized" package: prediction of patient response from genomic data Judith Boer array statistics T0-22

Dec 18 Hans van Houwelingen Analysis of gene expression (micro-array) growth curves Judith Boer array statistics V2-26/28

Dec 4 Rob Jelier The global test applied to finding associations between phenotype and biomedical concepts in high-throughput datasets. Judith Boer array statistics V2-26/28

Oct 9 Erwin Bakker (LIACS) The CMSB array-CGH database
options to add new array platforms can be discussed afterwards.
Judith Boer array statistics V2-26/28

Oct 2 Arif Anwar (Synamatix) Sequence data analysis Peter Taschner genomics/ bioinformatics T0-22

Sept 18 Jan Oosting (Pathology) Using genotype information and flow-sorting to improve copynumber calculations in high resolution SNP arrays Judith Boer array statistics V3-36

3 Juli highlights from the European Society for Human Genetics meeting in Nice
Eddy van Roonepigenetics/methylation profiling
Peter-Bram 't HoenmiRNA regulation of gene expression
Peter Hennemanetabolic Syndrome and population genetics
Jessica de Greefchromosome conformation capture: 3C, 4C and 5C
Judith Boer genomics/ bioinformatics T0-22

25 Juni Pearlly Yan (Ohio) Judith Boer genomics/ bioinformatics P0-112/115

19 Juni Matt Hestand Paper discussion:
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62.
Judith Boer genomics/ bioinformatics T0-22

12 Juni various speakers Experiences with methylation profiling genomics/ bioinformatics P0-112/115

22 Mei Helene Thygesen Inference at the levels of chromosomal regions Judith Boer array stat workdiscussion P0-112/115

15 Mei Lude Franke (Complex Genetics Section, UMCU) Increasing the power genome wide association studies by employing a functional human gene network. Renee de Menezes genomics/ bioinformatics T0-22

24 April Wessel van Wieringen & Mark van de Wiel Array-CGH data analysis tools. Renee de Menezes genomics/ bioinformatics P1-20

27 Maart Mike Parkinson A general introduction to the data analysis procedure and outputs of the Solexa 1G analyzer. Peter Taschner Genomics/Bioinf. P0-112/115

(13-14 hr)
Jelle Goeman Pathway testing in expression microarray data: On enrichment and the hypergeometic test Judith Boer Genomics/ bioinformatics T0-22

(13-14 hr)
Renee de Menezes Literature discussion: Connectivity Map Renee de Menezes Genomics/ bioinformatics P1-20

20-Feb Peter-Bram 't Hoen Literature-based comparisons of gene expression studies Judith Boer Array statistics T0-22

6-Feb Henk Buermans Use of GSEA gene sets in the global test Renee de Menezes R Users T0-22

(13-14 hr)
Justine Peeters
(Bioinformatics, ErasmusMC)
Identification of differentially regulated splice-variants, novel exons and mutated transcripts in glial brain tumors using Affymetrix whole-genome exon expression arrays Renee de Menezes Genomics/ Bioinformatics T0-22

(13-14 hr)
Paola Pedotti
(Human Genetics)
Platform comparison of mouse brain tissue on five expression array platforms and qPCR validation Judith Boer Array statistics P1-20
Willemijn Passtoors
(Molecular Epidemiology)
Human blood pilot expression study on two expression array platforms

< upcoming seminars

Time: 13.00-14.00
  V2-26/28 Second floor Education building
Hippocratespad 21, Leiden
  V3-36 Third floor Education building
Hippocratespad 21, Leiden
  V4-62 Fourth floor Education building
Hippocratespad 21, Leiden
  P0-112 Pathology, LUMC main building, ground floor (between P and L entrances)
Albinusdreef 2, 2333ZA Leiden
  P1-20 Pathology, LUMC main building, first floor
Albinusdreef 2, 2333ZA Leidenn
  T0-22 ground floor Research building,
Einthovenweg 20, Leiden
  S7-05 7th floor Research building,
Einthovenweg 20, Leiden
Route description

For more information contact Judith Boer ( 9422) or Peter Taschner ( 9424) or visit our website.

> web archive